clust.diff: Cluster Diff
In JulianSpagnuolo/FACkit: FACS Analysis Tool Kit

Cluster Diff

1 2	clust.diff(data, markers, cluster.id, test.method = "Chisq", p.adj = TRUE, padj.method = "BH")

`data`	data.frame of observations, column names must match names in markers
`markers`	character vector, length must match number of columns in data
`cluster.id`	character vector of length 1 matching the name of the column in data corresponding to the numeric cluster.id vector.
`test.method`	Character vector of length 1. Type of test to use in anova step. Default is "Chisq", see anova functionfor details.
`p.adj`	Logical. Whether to apply multiple testing correction or not. Default is TRUE.
`padj.method`	Character vector of length 1. Method of multiple testing correction to apply. Default is "BH" for Benjamini-Hochberg/FDR method, see p.adjust function for other method.