splitmerge: Split Merge

Description Usage Arguments Author(s)

Description

Split Merge

Usage

1
splitmerge(x, markers, clust.col, bin.list, noise.clust.id = NULL)

Arguments

x

data.frame. Contains marker expression and cluster id data.

markers

Character vector, identifies vectors in data containing the marker expression data.

clust.col

Character vector, column name identifying the vector of cluster ids.

bin.list

list of matrices. Each member of the list is a matrix defining the sub-clusters within each original clusters that should be split. Output from binmat function.

noise.clust.id

If a noise cluster is present in the data, this parameter will remove it from sub-clustering. Ie. DBScan identifies noise points as cluster "0". If NULL, this parameter is not used. Default is NULL.

Author(s)

Julian Spagnuolo


JulianSpagnuolo/FACkit documentation built on June 24, 2019, 12:18 p.m.