IonStar_DPpipeline: IonStar frame-to-protein pipeline

In JunQu-Lab/UHRIonStarApp: R Shiny-based web application UHR-IonStar

IonStar frame-to-protein pipeline

Description

These functions are IonStar frame-to-protein pipeline and its modules

Usage

IonStar_DPpipeline(
  raw,
  cond,
  log2form = TRUE,
  norm_method,
  TIC_type = "old",
  frameOR = NULL,
  pepOR = NULL,
  OR_method = "ratio",
  quan_method = "sum"
)

Arguments

raw	annotated frame file
cond	a matrix contains file names and their group information
log2form	choose if performing frame normalization on log2 level or not
norm_method	choose normalization method ("quantiles" or "TIC")
quan_method	choose peptide aggregation method ("sum" or "fit")

Value

Protein and peptide quantification results

JunQu-Lab/UHRIonStarApp documentation built on July 2, 2022, 12:47 a.m.