SpecRepoGen: Spectrum Report Generation
In JunQu-Lab/UHRIonStarApp: R Shiny-based web application UHR-IonStar
SpecRepoGen R Documentation
Spectrum Report Generation
Description
Convert mzid files produced by IDpicker to tsv file, then generate a PSM list
Usage
SpecRepoGen(protein, peptide, spectrum, mziddir, MSGFdir, output_name)
Arguments
protein
target protein file generated by IDpicker.
peptide
target peptide file generated by IDpicker.
spectrum
target spectrum file generated by IDpicker.
mziddir
directory of mzid files
MSGFdir
directory of MSGF+ java file
output_name
set the name for new PSM list
Value
A PSM list
JunQu-Lab/UHRIonStarApp documentation built on July 2, 2022, 12:47 a.m.
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| SpecRepoGen | R Documentation |
Spectrum Report Generation
Description
Convert mzid files produced by IDpicker to tsv file, then generate a PSM list
Usage
SpecRepoGen(protein, peptide, spectrum, mziddir, MSGFdir, output_name)
Arguments
protein |
target protein file generated by IDpicker. |
peptide |
target peptide file generated by IDpicker. |
spectrum |
target spectrum file generated by IDpicker. |
mziddir |
directory of mzid files |
MSGFdir |
directory of MSGF+ java file |
output_name |
set the name for new PSM list |
Value
A PSM list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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