GenoData_S2: Data about information of molecular markers chromosome id,...

In JunhuiLi1017/JM4QTN: Joint Mapping for QTN

Description

A data frame with 647 individual observations, chromosome id and genetic distance position on the following 2431 molecular maker variables

Usage

data("GenoData_S2")

Format

A data frame with 649 observations on the following 2431 variables

A data frame with 649 observations on the following 2431 variables, the rows 'chr' and 'pos' is the chromosome id and genetic distance position of markers, other rows are the marker genotype on 647 individuals, where 0 and 2 stands for genotype AA and BB respectivly, decimal is marker conditional probability genotype with steps = 2.

Details

This data frame is combined from geneticMap and genotype data with estimated missing markers, which can be calculated by function calGenoProb(GeneticMap, GenoData, steps=2, croType, Gn)

References

Hu, H., Meng, Y., Wang, H., Liu, H., and Chen, S. (2012). Identifying quantitative trait loci and determining closely related, stalk traits for rind penetrometer resistance in a high-oil maize, population. Theoretical and Applied Genetics, 124(8), 1439-1447.

Hu, H., Liu, W., Fu, Z., Homann, L., Technow, F., and Wang, H., et al. (2013). Qtl mapping of stalk bending strength in a recombinant inbred line maize population. Theoretical and Applied Genetics, 126(9), 2257-66.

Examples

data(GenoData_S2)

JunhuiLi1017/JM4QTN documentation built on June 4, 2019, 4:10 a.m.