ExtractTargetMsMS: ExtractTargetMsMs

In JustinZZW/ImmsTools: Some tools for ion mobility mass spectrometry data processing

Description

ExtractTargetMsMs

Usage

ExtractTargetMsMS(msms_file, polarity = c("positive", "negative"),
  mode = c("SPMCE", "MPSCE", "SPSCE"), ce_levels = c("CE10", "CE20",
  "CE40"))

Arguments

msms_file	mzXML file format
polarity	'positive', 'negative'. Default: 'positive'
mode	SPMCE: single precursor with multiple CEs; MPSCE: multiple precursors, but single CE for each precursor; SPSCE: single precursor with one CE;
ce_levels	collison energy. Default: c("CE10", "CE20", "CE40")

Author(s)

Zhiwei Zhou

Examples

setwd('F:/01 MetIMMS/00 data processing/190702 extract msms spectra from targeted 6560 data/convert_msms')
test <- ExtractTargetMsMS(msms_file = "L0656_H_pos_10ppm.mzXML", polarity = 'positive', mode = 'SPMCE', ce_levels = c("CE10", "CE20", "CE40"))

JustinZZW/ImmsTools documentation built on July 9, 2019, 9:32 a.m.