Man pages for KWB-R/kwb.qmra
QMRA (quantitative microbial risk assessment)
| backcalcHelper_infectionRisk_perDay | Backcalculate risk: infection (helper function) |
| backcalc_infectionRisk_perDay | Backcalculate risk: infection (using optimise() function) |
| calc_health_risk | Risk calculation: health |
| calc_infection_risk | Risk calculation: infection |
| config_default_json | config_dummy_json: dummy configuration for... |
| config_dummy_json | config_default_json: default configuration developed by... |
| config_read | Config: read configuration |
| config_write | Config: create configuration |
| config_write_dummy | Config: create dummy configuration |
| create_random_distribution | Create random distribution |
| default_max | Default Max |
| default_min | Default Min |
| distribution_repeater | Helper function: distributon repeater |
| dr.betapoisson | Dose-response model: beta-poisson |
| dr.db_download | Download dose-response model database from QMRAwiki |
| dr.db_model | Generate table with different doses for dr.db_download() |
| dr.expo | Dose-response model: exponential |
| generate_random_values | Create random distribution based on configuration file |
| get_percentile | Helper function: get percentile |
| myggtheme | Helper function: create default ggplot theme |
| number_of_exposures | Helper function: gets number of exposures from config |
| number_of_repeatings | Helper function: gets number of repeatings from config |
| opencpu_config_read | OpenCPU wrapper: import config from CSV and convert to JSON |
| opencpu_simulate_risk | OpenCPU wrapper: run risk calculation and convert results to... |
| pipe | Pipe operator |
| plot_doseresponse | plot reduction |
| plot_effluent | plot effluent |
| plot_event_dalys | plot dalys_per_event |
| plot_event_dose | plot dose per event |
| plot_event_exposure | plot exposure per event |
| plot_event_illnessProb | plot illness probability |
| plot_event_infectionProb | plot infection probability |
| plot_event_volume | plot volume per event |
| plot_inflow | plot inflow |
| plot_reduction | plot reduction |
| plot_total_dalys | plot total DALYs |
| plot_total_illnessProb | plot total illness probability |
| plot_total_infectionProb | plot total infection probability |
| poisson_dose | Helper function: poisson distribution based on exposure per... |
| report_workflow | Create report (not working for "shiny" reports) |
| risk_dummy_json | risk_dummy_json: example risk_json object returned by... |
| run_app | Run shiny app |
| simulate_exposure | Simulate: exposure |
| simulate_inflow | Simulate: inflow |
| simulate_risk | Simulate: risk |
| simulate_treatment | Simulate: treatment |
| who_getTreatment | Treatment: get WHO reductions |
| xlogscale | Helper function: prepare xlogscale appearence |
| ylogscale | Helper function: prepare ylogscale appearence |
