Files in KWB-R/kwb.qmra

QMRA (quantitative microbial risk assessment)

.Rbuildignore

.gitattributes

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/pr-commands.yaml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

NEWS.md R/.compare_risk.R R/.influents.R R/.pathogens.R R/.test.R R/.workflow.R R/backcalculate_risk.R R/calculate_risk.R R/config.R R/datasets.R R/doseresponse.R R/get_risk_logremoval_stats.R R/get_risk_total_stats.R R/get_stop_text.R R/opencpu.R R/plot.R R/print.R R/random_distribution.R R/reports.R R/shiny.R R/simulate.R R/treatment.R R/utils-pipe.R R/utils.R README.md

_pkgdown.yaml

binder/dummy_config.jpg

binder/install.R

binder/postBuild

binder/qmra_workflow.jpg

binder/runtime.txt

binder/usage.R binder/usage.Rmd

codecov.yml

data-raw/config_json.R data-raw/risk_json.R

data/config_default_json.rda

data/config_dummy_json.rda

data/risk_dummy_json.rda

index.md

inst/extdata/configs/default/doseresponse.csv

inst/extdata/configs/default/exposure.csv

inst/extdata/configs/default/health.csv

inst/extdata/configs/default/inflow.csv

inst/extdata/configs/default/treatment_processes.csv

inst/extdata/configs/default/treatment_schemes.csv

inst/extdata/configs/dummy/doseresponse.csv

inst/extdata/configs/dummy/exposure.csv

inst/extdata/configs/dummy/health.csv

inst/extdata/configs/dummy/inflow.csv

inst/extdata/configs/dummy/treatment_processes.csv

inst/extdata/configs/dummy/treatment_schemes.csv

inst/extdata/configs/dummy_log10_norm/doseresponse.csv

inst/extdata/configs/dummy_log10_norm/exposure.csv

inst/extdata/configs/dummy_log10_norm/health.csv

inst/extdata/configs/dummy_log10_norm/inflow.csv

inst/extdata/configs/dummy_log10_norm/treatment_processes.csv

inst/extdata/configs/dummy_log10_norm/treatment_schemes.csv

inst/extdata/configs/dummy_log10_uniform/doseresponse.csv

inst/extdata/configs/dummy_log10_uniform/exposure.csv

inst/extdata/configs/dummy_log10_uniform/health.csv

inst/extdata/configs/dummy_log10_uniform/inflow.csv

inst/extdata/configs/dummy_log10_uniform/treatment_processes.csv

inst/extdata/configs/dummy_log10_uniform/treatment_schemes.csv

inst/extdata/doseresponse/dr_db.csv

inst/extdata/monitoring/WHO2011_PathogensInDrinkingWater.xlsx

inst/extdata/report/doseresponse.Rmd inst/extdata/report/workflow.Rmd inst/extdata/scripts/qmra_memory_usage.R inst/extdata/scripts/reverse_engineer.R

inst/www/css/app.css

inst/www/index.html

inst/www/js/app.js

inst/www/js/jquery-1.11.1.min.js

inst/www/js/opencpu-0.4.js

kwb.qmra.Rproj

man/backcalcHelper_infectionRisk_perDay.Rd man/backcalc_infectionRisk_perDay.Rd man/calc_health_risk.Rd man/calc_infection_risk.Rd man/config_default_json.Rd man/config_dummy_json.Rd man/config_read.Rd man/config_write.Rd man/config_write_dummy.Rd man/create_random_distribution.Rd man/default_max.Rd man/default_min.Rd man/distribution_repeater.Rd man/dr.betapoisson.Rd man/dr.db_download.Rd man/dr.db_model.Rd man/dr.expo.Rd man/generate_random_values.Rd man/get_percentile.Rd man/myggtheme.Rd man/number_of_exposures.Rd man/number_of_repeatings.Rd man/opencpu_config_read.Rd man/opencpu_simulate_risk.Rd man/pipe.Rd man/plot_doseresponse.Rd man/plot_effluent.Rd man/plot_event_dalys.Rd man/plot_event_dose.Rd man/plot_event_exposure.Rd man/plot_event_illnessProb.Rd man/plot_event_infectionProb.Rd man/plot_event_volume.Rd man/plot_inflow.Rd man/plot_reduction.Rd man/plot_total_dalys.Rd man/plot_total_illnessProb.Rd man/plot_total_infectionProb.Rd man/poisson_dose.Rd man/report_workflow.Rd man/risk_dummy_json.Rd man/run_app.Rd man/simulate_exposure.Rd man/simulate_inflow.Rd man/simulate_risk.Rd man/simulate_treatment.Rd man/who_getTreatment.Rd man/xlogscale.Rd man/ylogscale.Rd tests/testthat.R tests/testthat/test-function-add_pathogen_name.R tests/testthat/test-function-add_scheme_name.R tests/testthat/test-function-add_treatment_name.R tests/testthat/test-function-backcalcHelper_infectionRisk_perDay.R tests/testthat/test-function-backcalc_infectionRisk_perDay.R tests/testthat/test-function-calc_health_risk.R tests/testthat/test-function-calc_infection_risk.R tests/testthat/test-function-config_read.R tests/testthat/test-function-config_write.R tests/testthat/test-function-config_write_dummy.R tests/testthat/test-function-create_random_distribution.R tests/testthat/test-function-default_max.R tests/testthat/test-function-default_min.R tests/testthat/test-function-distribution_repeater.R tests/testthat/test-function-dr.betapoisson.R tests/testthat/test-function-dr.db_download.R tests/testthat/test-function-dr.db_model.R tests/testthat/test-function-dr.expo.R tests/testthat/test-function-gather_total_risk.R tests/testthat/test-function-generate_random_values.R tests/testthat/test-function-get_dose_response_values.R tests/testthat/test-function-get_dr_model.R tests/testthat/test-function-get_exposure_value_or_stop.R tests/testthat/test-function-get_infection_prob.R tests/testthat/test-function-get_percentile.R tests/testthat/test-function-get_risk_logremoval_stats.R tests/testthat/test-function-get_risk_logremoval_stats_lean.R tests/testthat/test-function-get_risk_total_stats.R tests/testthat/test-function-get_risk_total_stats_lean.R tests/testthat/test-function-get_scheme_events_wide.R tests/testthat/test-function-get_stop_text.R tests/testthat/test-function-get_treatment_data.R tests/testthat/test-function-group_by_treatment_and_pathogen.R tests/testthat/test-function-group_by_treatment_and_pathogen_group.R tests/testthat/test-function-id_columns_to_integer.R tests/testthat/test-function-myggtheme.R tests/testthat/test-function-number_of_exposures.R tests/testthat/test-function-number_of_repeatings.R tests/testthat/test-function-opencpu_config_read.R tests/testthat/test-function-opencpu_simulate_risk.R tests/testthat/test-function-pathogen_columns.R tests/testthat/test-function-plot_doseresponse.R tests/testthat/test-function-plot_effluent.R tests/testthat/test-function-plot_event_dalys.R tests/testthat/test-function-plot_event_dose.R tests/testthat/test-function-plot_event_exposure.R tests/testthat/test-function-plot_event_illnessProb.R tests/testthat/test-function-plot_event_infectionProb.R tests/testthat/test-function-plot_event_volume.R tests/testthat/test-function-plot_inflow.R tests/testthat/test-function-plot_reduction.R tests/testthat/test-function-plot_total_dalys.R tests/testthat/test-function-plot_total_illnessProb.R tests/testthat/test-function-plot_total_infectionProb.R tests/testthat/test-function-poisson_dose.R tests/testthat/test-function-print_basic_information.R tests/testthat/test-function-print_repeatings_exposures.R tests/testthat/test-function-print_simulated_pathogens.R tests/testthat/test-function-print_step.R tests/testthat/test-function-report_workflow.R tests/testthat/test-function-run_app.R tests/testthat/test-function-scheme_columns.R tests/testthat/test-function-simulate_exposure.R tests/testthat/test-function-simulate_inflow.R tests/testthat/test-function-simulate_risk.R tests/testthat/test-function-simulate_risk_lean.R tests/testthat/test-function-simulate_treatment.R tests/testthat/test-function-simulate_treatment_lean.R tests/testthat/test-function-summarise_logreduction.R tests/testthat/test-function-summarise_value.R tests/testthat/test-function-treatment_columns.R tests/testthat/test-function-who_getTreatment.R tests/testthat/test-function-xlogscale.R tests/testthat/test-function-ylogscale.R vignettes/.OldFord_PotableReuse.Rmd vignettes/.OldFord_PublicIrrigation.Rmd

vignettes/.gitignore

vignettes/doseresponse.Rmd

vignettes/dummy_config.jpg

vignettes/general.Rmd vignettes/installation.Rmd

vignettes/qmra_workflow.jpg

vignettes/test_random_distributions_inflow.Rmd vignettes/usage.Rmd vignettes/usage_log10_norm_inflow.Rmd vignettes/usage_log10_uniform_inflow.Rmd vignettes/web_app.Rmd

KWB-R/kwb.qmra documentation built on June 15, 2021, 11:14 p.m.