pcr_plan: Plan PCR experiment

In KaiAragaki/amplify: Automate PCR Tasks Reproducibly

Plan PCR experiment

Description

Plan PCR experiment

Usage

pcr_plan(
  data,
  n_primers,
  format = 384,
  exclude_border = TRUE,
  primer_names = NULL,
  headless = TRUE,
  has_names = TRUE
)

Arguments

data	a data.frame, with samples as the first column (if has_names = TRUE) and RNA concentrations as the second (or first, if has_names = FALSE)
n_primers	integer. Number of primers to be used in the experiment.
format	integer. 96 or 384 - the number of wells of the plate planned to be used
exclude_border	logical. Should the border be excluded to avoid edge effects? Default is TRUE.
primer_names	character vector. Names of primers.
headless	logical. If FALSE, return invisible and redirect to shiny application.
has_names	logical. Is the first column the names of the samples?

Value

a named list

Examples

dummy_rna_conc |>
  pcr_plan(n_primers = 3)

KaiAragaki/amplify documentation built on Oct. 14, 2024, 11:46 p.m.