ice_fase: reconstructs phylogeny with phylotime, and infers...
In Kalhor-Lab/QFM: Quantitative Fate Mapping with ICE-FASE and Phylotime
ice_fase R Documentation
reconstructs phylogeny with phylotime, and infers quantitative fate map with ice_fase
Description
reconstructs phylogeny with phylotime, and infers quantitative fate map with ice_fase
Usage
ice_fase(tr, sc_celltypes, total_time, root_time = 0, theta = 0)
Arguments
tr
a phylogenetic tree of the "phylo" type
sc_celltypes
either a named character vector specifying types for each row in the cell_mat or a function to be applied to the rownames of the character matrix
total_time
time at sample collection since barcode activation
theta
depracated parameters always set to zero
Value
Fitted ICE_FASE results
Kalhor-Lab/QFM documentation built on Nov. 25, 2024, 10:18 p.m.
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| ice_fase | R Documentation |
reconstructs phylogeny with phylotime, and infers quantitative fate map with ice_fase
Description
reconstructs phylogeny with phylotime, and infers quantitative fate map with ice_fase
Usage
ice_fase(tr, sc_celltypes, total_time, root_time = 0, theta = 0)
Arguments
tr |
a phylogenetic tree of the "phylo" type |
sc_celltypes |
either a named character vector specifying types for each row in the cell_mat or a function to be applied to the rownames of the character matrix |
total_time |
time at sample collection since barcode activation |
theta |
depracated parameters always set to zero |
Value
Fitted ICE_FASE results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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