make_type_graph: Constructor for type graph
In Kalhor-Lab/QFM: Quantitative Fate Mapping with ICE-FASE and Phylotime

make_type_graph

R Documentation

Constructor for type graph

Description

Constructor for type graph

Usage

make_type_graph(
  root_id,
  node_id,
  tip_id,
  merge_matrix,
  differntiation_time,
  differntiation_mode_probs,
  double_time,
  founder_size,
  target_time,
  transition_selection = NULL
)

Arguments

`root_id`	name of root, which is the integer num_tip - 1
`node_id`	vector of names of the graph nodes, i.e. progenitor states
`tip_id`	vector of names of the graph tip, i.e. terminal states
`merge_matrix`	character matrix specifying the sequence of merges
`differntiation_mode_probs`	commitment bias, need to be vector of length 5, only first values two are non-zero
`double_time`	list of doubling times for each state
`founder_size`	founder size
`target_time`	time of sample collection
`differentiation_time`	commitment time of states