Description Usage Arguments Value Examples
ComputeCE
returns ranks of the genes based on CE scores.
1 |
file |
A tab-delimited text file with a minimum of 2 columns. First column should contain gene names and second column should indicate the evidence type. |
PC |
A character string among 'equal', 'ngene' or 'custom' indicating the prior credibility. |
cust.weights |
An optional argument required when the PC='custom'. A numeric vector containing weights reflecting prior credibility. Should contain as many weights as the number of evidence types. |
If all the inputs are in the correct format as suggested, then the output will be a dataframe containing genes and their ranks based on CE scores.
1 2 3 4 | input_file <- system.file("extdata","CE_RP_toydata.txt",package="GenRank")
CE_ranks <- ComputeCE(input_file,PC = "equal")
evid.weight <- c(1,1,0.8,0.8,0.5,1)
CE_ranks_cust <- ComputeCE(input_file,PC = "custom", cust.weights = evid.weight)
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