optsol_dGSMEF-class: Class "optsol_dGSMEF"

Description Usage Arguments See Also Examples

Description

Structure of class optsol_dGSMEF. Objects of that class are returned by the function dGSMEF.

Constructor method for optsol_dGSMEF class

Usage

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optsol_dGSMEF(concmat, exRxn, tmVec, bmVec, flux, redCost, Rxn)

## S4 method for signature 'optsol_dGSMEF,missing'
plot(x, y, plotRxns = NULL,
  plotFlux = NULL)

Arguments

concmat

Object of class "matrix" containing concentrations of extracellular metabolite and recombinant protein.

exRxn

Object of class "matrix" containing names of exchange reactions for the EC metabolites.

tmVec

Object of class "numeric" Vector of time points

bmVec

Object of class "numeric" Vector of biomass concentrations

flux

Object of class "fluxDistribution" containing the solutons flux distributions.

redCost

Object of class "matrix" containing the solutons flux distributions.

Rxn

Object of class "character" Vector of names of exchange reactions for the EC metabolites.

x

An object of class optsol_dGSMEF.

y

not used but kept for compitability with generic plot.

plotRxns

List of reaction id's to be ploted (metabolite concentrations).

plotFlux

List of reaction id's to be ploted (reaction fluxes).

See Also

dGSMEF

Examples

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showClass("optsol_dGSMEF")

Kange2014/dGSMEF documentation built on July 19, 2017, 3:47 p.m.