optsol_dGSMEF-class: Class "optsol_dGSMEF"
In Kange2014/dGSMEF: A dynamic genome-scale modelling of E. coli fermentation

Description Usage Arguments See Also Examples

Structure of class optsol_dGSMEF. Objects of that class are returned by the function dGSMEF.

Constructor method for optsol_dGSMEF class

optsol_dGSMEF(concmat, exRxn, tmVec, bmVec, flux, redCost, Rxn)

## S4 method for signature 'optsol_dGSMEF,missing'
plot(x, y, plotRxns = NULL,
  plotFlux = NULL)

`concmat`	Object of class "matrix" containing concentrations of extracellular metabolite and recombinant protein.
`exRxn`	Object of class "matrix" containing names of exchange reactions for the EC metabolites.
`tmVec`	Object of class "numeric" Vector of time points
`bmVec`	Object of class "numeric" Vector of biomass concentrations
`flux`	Object of class "fluxDistribution" containing the solutons flux distributions.
`redCost`	Object of class "matrix" containing the solutons flux distributions.
`Rxn`	Object of class "character" Vector of names of exchange reactions for the EC metabolites.
`x`	An object of class `optsol_dGSMEF`.
`y`	not used but kept for compitability with generic plot.
`plotRxns`	List of reaction id's to be ploted (metabolite concentrations).
`plotFlux`	List of reaction id's to be ploted (reaction fluxes).