Usage Format Source References Examples
1 | data("Data_HHM")
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A data frame with 1000 observations on the following 4 variables.
position
The location of the site i on a chromosome
CT
the observed count of C reads and T reads for each site i
origin
The statue of the ith Cpg site, 0 : the site is unmethylated, 1 : the site is methylated
Ccount
the observed count of C reads at the ith CpG site
http://www.wgbssuite.org.uk/
Rackham OJ, Dellaportas P, Petretto E1, Bottolo L: WGBSSuite: simulating whole-genome bisulphite sequencing data and benchmarking differential DNA methylation analysis tools. 10.1093/bioinformatics/btv114. Epub Mar 15
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