Data_MSC: data set generated using the same parameters as in Cheng et...
In KarimOualkacha/SmoothMSC: The smooth methylation status calling (SMSC) procedure
Usage
Format
References
Examples
Usage
1
data("Data_MSC")
Format
A data frame with 1000 observations on the following 4 variables.
positionThe location of the site i on a chromosome
CTthe observed count of C reads and T reads for each site i
originThe statue of the ith Cpg site, 0 : the site is unmethylated, 1 : the site is methylated
Ccountthe observed count of C reads at the ith CpG site
References
Cheng L, Zhu Y. A classification approach for DNA methylation profiling with bisulfite next-generation sequencing data. Bioinformatics. 2014; 30(2):172–9.
Examples
1
2
KarimOualkacha/SmoothMSC documentation built on May 8, 2019, 4:49 p.m.
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Usage Format References Examples
Usage
1 | data("Data_MSC")
|
Format
A data frame with 1000 observations on the following 4 variables.
positionThe location of the site i on a chromosome
CTthe observed count of C reads and T reads for each site i
originThe statue of the ith Cpg site, 0 : the site is unmethylated, 1 : the site is methylated
Ccountthe observed count of C reads at the ith CpG site
References
Cheng L, Zhu Y. A classification approach for DNA methylation profiling with bisulfite next-generation sequencing data. Bioinformatics. 2014; 30(2):172–9.
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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