Man pages for KasperSkytte/mmgenome2
Tools for extracting individual genomes from metagenomes
| checkReqPkg | Check for installed package |
| checkReqPkgs | Check for installed package(s) |
| dot-onAttach | .onAttach |
| mate_pairs | Example data |
| mmexpand_network | Find connections of a subset of scaffolds in a larger set of... |
| mmexport | Export DNA sequences of selected scaffolds |
| mmextract | Extract all scaffolds within a selection polygon |
| mmgenome2 | Example data |
| mmheatmap | Heatmap of the most abundant bins |
| mmload | Load and combine data for use with other mmgenome2 functions |
| mmlocator | Locate points in a ggplot2 plot |
| mmmerge | Merge mm object with more data |
| mmmerge_linkfiles | Load and merge files with mate-pair or paired-end connection... |
| mmnetwork | Network plot of mate-pair or paired-end connected scaffold... |
| mmplot | Visualise metagenomes in various ways |
| mmplot_cov_profiles | Compare coverage profiles |
| mmplot_pairs | Plot multiple combinations of variables in a pairs plot |
| mmscanbins | Retrieve scaffold names from all genome bins in a folder |
| mmstats | Print basic statistics of metagenome data |
| paired_ends | Example data |
| print.ggplot | Custom ggplot object print to suppress warnings |
