mmmerge_linkfiles: Load and merge files with mate-pair or paired-end connection...

In KasperSkytte/mmgenome2: Tools for extracting individual genomes from metagenomes

Description

Searches a folder for all files with a filename ending with "_link", and then all the files found are loaded and merged into one data frame. This is done by searching the files for all unique scaffold pairs and summing the number of connections per pair. The files must contain 3 columns called "scaffold1", "scaffold2", and "connections".

Usage

mmmerge_linkfiles(path, verbose = TRUE)

Arguments

path	(required) Path to a folder.
verbose	(Logical) Whether to print status messages of the process. (Default: TRUE)

Value

A tibble

Examples

## Not run: 
links <- mmmerge_linkfiles("path/to/folder")

## End(Not run)

KasperSkytte/mmgenome2 documentation built on Dec. 14, 2021, 12:11 a.m.