syn_pvalues: Synovial differential expression of genes across pathotypes...

In KatrionaGoldmann/volcano3Ddata: Data for Interactive Plotting of Three-Way Differential Expression Analysis

Description

A dataset containing the differential expression parameters between different pathotype groups for 81 synovial biopsies from the PEAC cohort.

Usage

syn_pvalues

Format

A data frame with 16235 rows representing genes/probes and 13 columns for each statistical parameter:

Module

The gene name

Fibroid-Lymphoid pvalue

pvalue from fibroid vs lymphoid comparison

Fibroid-Lymphoid padj

adjusted pvalue from fibroid vs lymphoid comparison

Fibroid-Lymphoid log2FoldChange

logarithmic fold change from fibroid vs lymphoid comparison

Lymphoid-Myeloid pvalue

pvalue from lymphoid vs myeloid comparison

Lymphoid-Myeloid padj

adjusted pvalue from lymphoid vs myeloid comparison

Lymphoid-Myeloid log2FoldChange

logarithmic fold change from lymphoid vs myeloid comparison

Myeloid-Fibroid pvalue

pvalue from myeloid vs fibroid comparison

Myeloid-Fibroid padj

adjusted pvalue from myeloid vs fibroid comparison

Myeloid-Fibroid log2FoldChange

logarithmic fold change from myeloid vs fibroid comparison

LRT pvalue

pvalue from three-way likelihood ratio comparison

LRT padj

adjusted pvalue from three-way likelihood ratio comparison

LRT log2FoldChange

logarithmic fold change from three-way likelihood ratio comparison

Source

https://www.cell.com/cell-reports/fulltext/S2211-1247(19)31007-1

KatrionaGoldmann/volcano3Ddata documentation built on May 27, 2020, 12:10 a.m.