Man pages for Katsevich-Lab/sceptre
Analysis of Single-Cell CRISPR Screen Data
| assign_grnas | Assign gRNAs to cells |
| construct_cis_pairs | Construct _cis_ pairs |
| construct_positive_control_pairs | Construct positive control pairs |
| construct_trans_pairs | Construct _trans_ pairs |
| gene_position_data_frame_grch38 | Gene position data frames |
| get_grna_assignments | Get gRNA assignments |
| get_response_matrix | Data getter functions |
| get_result | Get result |
| import_data | Import data |
| import_data_from_cellranger | Import data from Cell Ranger |
| import_data_from_parse | Import data from Parse (experimental) |
| plot_assign_grnas | Plot assign gRNAs |
| plot_covariates | Plot covariates |
| plot_grna_count_distributions | Plot gRNA count distributions |
| plot_response_grna_target_pair | Plot response-gRNA-target pair |
| plot_run_calibration_check | Plot run calibration check |
| plot_run_discovery_analysis | Plot run discovery analysis |
| plot_run_power_check | Plot run power check |
| plot_run_qc | Plot run QC |
| plot-sceptre_object-method | Plot |
| print-sceptre_object-method | |
| read_ondisc_backed_sceptre_object | Write or read an 'ondisc'-backed 'sceptre_object' |
| run_calibration_check | Run calibration check |
| run_discovery_analysis | Run discovery analysis |
| run_power_check | Run power check |
| run_qc | Run QC |
| sceptre-package | sceptre |
| set_analysis_parameters | Set analysis parameters |
| write_outputs_to_directory | Write outputs to directory |
