In KeachMurakami/fudukue:

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "README-"
)

fudukue (文机)

fukudue is a collection of R packages developed to support literate programming with R mainly for the author. This package will be used in conjunction with tidyverse and knitr.

Installation

You can install:

the latest development version from github with

# install.packages("devtools") # if not installed
devtools::install_github("KeachMurakami/fudukue")

How to use

functions for routine operations

following functions are automatically globalized when this package is attached.

length2, sum2, sd2, mean2
- na.rm = T versions
se
- calculates a non-biased standard error
%!in% (binary operator)
- a %!in% b returns !(a %in% b)

consistent cross-references .pfd and .docx

demo

fudukue implements the following verbs to generate consistent cross-references both in .pdf and .docx (described in reference_switch.R).

initialize_ref()
- setups lookup table.
update_ref()
- adds id to newly called object.
ref_eqn(), ref_fig(), ref_table()
- generate continuous numbering from the given id.

citation managements

fudukue implements the following verbs to manage bibtex-style references. .bib files for respective articles are stored as bibtex/list_bib/***.bib

update_cite()
- calls update_abbrv() and update_bib().
update_abbrv()
- loads abbreviation lists (.csv) and generates abbrev_XXX.bib files required for update_bib().
update_bib()
- merges all bibtex files into three files.
  - Full.bib: non-abbreviated full-length titles
  - With.bib: abbreviated titles with periods
  - Without.bib: abbreviated titles without periods