API for KechrisLab/MSPrep
Package for Summarizing, Filtering, Imputing, and Normalizing Metabolomics Data
| Global functions | |
|---|---|
| .controlSummary | Source code |
| .createCRMNInputs | Source code |
| .ctlCompounds | Source code |
| .dfFilter | Source code |
| .dfImpute | Source code |
| .dfLogTransform | Source code |
| .dfNormalize | Source code |
| .dfNormalizeCombat | Source code |
| .dfNormalizeMedianCombat | Source code |
| .dfNormalizeQuantileCombat | Source code |
| .dfParamValidation | Source code |
| .dfSummarize | Source code |
| .dfTidy | Source code |
| .dfToSE | Source code |
| .filterParamValidation | Source code |
| .genAdj | Source code |
| .halfminIfAnyNegative | Source code |
| .imputeBpca | Source code |
| .imputeHalfmin | Source code |
| .imputeKnn | Source code |
| .imputeParamValidation | Source code |
| .imputeRf | Source code |
| .isIS | Source code |
| .msTidy | Source code |
| .normalizeCRMN | Source code |
| .normalizeMedian | Source code |
| .normalizeParamValidation | Source code |
| .normalizeQuantile | Source code |
| .normalizeRUV | Source code |
| .normalizeSVA | Source code |
| .replaceMissing | Source code |
| .returnSummarized | Source code |
| .ruvFactors | Source code |
| .seCreateCRMNInputs | Source code |
| .seFilter | Source code |
| .seImpute | Source code |
| .seNormalize | Source code |
| .seNormalizeCRMN | Source code |
| .seNormalizeCombat | Source code |
| .seNormalizeMedian | Source code |
| .seNormalizeMedianCombat | Source code |
| .seNormalizeQuantile | Source code |
| .seNormalizeQuantileCombat | Source code |
| .seNormalizeRUV | Source code |
| .seNormalizeSVA | Source code |
| .seRUVFactors | Source code |
| .seSVAFactors | Source code |
| .seSummarize | Source code |
| .seTidy | Source code |
| .seToDF | Source code |
| .selectSummaryMeasure | Source code |
| .setMissingNegativeVals | Source code |
| .summarizeParamValidation | Source code |
| .svaFactors | Source code |
| .tidyFilter | Source code |
| .tidyReturn | Source code |
| .tidySummarize | Source code |
| COPD_131 | Man page |
| MSPrep | Man page |
| msFilter | Man page Source code |
| msImpute | Man page Source code |
| msNormalize | Man page Source code |
| msPrepare | Man page Source code |
| msSummarize | Man page Source code |
| msquant | Man page |
