correct_pool: Correct Pool
In KevinGHicks/MIDAS: MIDAS
correct_pool R Documentation
Correct Pool
Description
Subtracts the top principal components from a matrix of proteins x metabolites
Usage
correct_pool(pool_data, npcs = 3)
Arguments
pool_data
tibble containing protein, metabolite, and log2_abundance
npcs
number of principal components to subtract
Value
a list containing:
- pool_log2_matrix
A matrix of uncorrected abundances
- scree_data
Percent variance explained for each PC
- top_pc_fit
Projection onto top principal components
- log2_pc_projection
pool_log2_matrix - top_pc_fit
- log2_pc_projection_tbl
tibble of log2_pc_projection
KevinGHicks/MIDAS documentation built on May 12, 2022, 8:14 a.m.
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| correct_pool | R Documentation |
Correct Pool
Description
Subtracts the top principal components from a matrix of proteins x metabolites
Usage
correct_pool(pool_data, npcs = 3)
Arguments
pool_data |
tibble containing protein, metabolite, and log2_abundance |
npcs |
number of principal components to subtract |
Value
a list containing:
- pool_log2_matrix
A matrix of uncorrected abundances
- scree_data
Percent variance explained for each PC
- top_pc_fit
Projection onto top principal components
- log2_pc_projection
pool_log2_matrix-top_pc_fit- log2_pc_projection_tbl
tibble of log2_pc_projection
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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