ComponentPlot: ComponentPlot

In KidneyRegeneration/DevKidCC: Developing Kidney Cell Classifier

ComponentPlot

Description

ComponentPlot

Usage

ComponentPlot(
  data,
  identity = "orig.ident",
  component = "DKCC",
  feature = "MALAT1",
  show.unassigned = TRUE,
  show.pct = FALSE,
  show.gene.exp = FALSE,
  do.label = T
)

Arguments

data	seurat object
identity	column name in metadata for sample identity
component	column name in metadata for annotation/classification identity
feature	gene for expression visualisation, only shown if show.gene.exp is TRUE
show.unassigned	include unassigned cells in visualisation, TRUE by default
show.pct	change plot to show percentage of cells instead of total cell number
show.gene.exp	colour by expression of "feature" in each annotation category
do.label	add label to plot, TRUE by default

Value

ggplot object

Examples

ComponentPlot(organoid, show.pct = TRUE)

KidneyRegeneration/DevKidCC documentation built on July 22, 2024, 8:47 a.m.