GeneSummary: GeneSummary

In KidneyRegeneration/DevKidCC: Developing Kidney Cell Classifier

GeneSummary

Description

GeneSummary

Usage

GeneSummary(
  data,
  identity = "orig.ident",
  split.by = "DKCC",
  features = rownames(data),
  cells = colnames(data),
  do.norm = T,
  group.by = NULL
)

Arguments

data	seurat object
identity	column name in metadata describing required sample identity
split.by	column name in metadat describing required annotation/classification identity
features	features to use, defaults to all
cells	cells to use, defaults to all
do.norm	option to run normalisation on data if not already done, set TRUE if required
group.by	secondary grouping identity, default is NULL

Examples

output <- GeneSummary(organoid, features = c("GAPDH", "SIX2", "JAG1", "EPCAM", "NPHS1"))

KidneyRegeneration/DevKidCC documentation built on July 22, 2024, 8:47 a.m.