ggevonet: ggevonet

In KlausVigo/ggnetworx: Visualization of Phylogenetic Networks

ggevonet

Description

drawing phylogenetic tree from phylo object

Usage

ggevonet(
  tr,
  mapping = NULL,
  layout = "slanted",
  open.angle = 0,
  mrsd = NULL,
  as.Date = FALSE,
  yscale = "none",
  yscale_mapping = NULL,
  ladderize = FALSE,
  right = FALSE,
  branch.length = "branch.length",
  ndigits = NULL,
  min_crossing = TRUE,
  ...
)

Arguments

tr	phylo object
mapping	aes mapping
layout	one of 'rectangular', 'slanted'
open.angle	open angle, only for 'fan' layout
mrsd	most recent sampling date
as.Date	logical whether using Date class in time tree
yscale	y scale
yscale_mapping	yscale mapping for category variable
ladderize	logical
right	logical
branch.length	variable for scaling branch, if 'none' draw cladogram
ndigits	number of digits to round numerical annotation variable
min_crossing	logical, rotate clades to minimize crossings
...	additional parameter

Value

tree

Author(s)

Klaus Schliep

See Also

evonet, ggtree

Examples

(enet <- ape::read.evonet(text="((a:2,(b:1)#H1:1):1,(#H1,c:1):2);"))
ggevonet(enet) + geom_tiplab()

KlausVigo/ggnetworx documentation built on Dec. 25, 2024, 2:38 a.m.