ggevonet: ggevonet

In KlausVigo/tanggle: Visualization of Phylogenetic Networks

ggevonet

Description

drawing phylogenetic tree from phylo object

Usage

ggevonet(tr, mapping = NULL, layout = "slanted", mrsd = NULL,
  as.Date = FALSE, yscale = "none", yscale_mapping = NULL,
  ladderize = FALSE, right = FALSE, branch.length = "branch.length",
  ndigits = NULL, min_crossing = TRUE, ...)

Arguments

tr	a evonet object
mapping	aes mapping
layout	one of 'rectangular', 'slanted'
mrsd	most recent sampling date
as.Date	logical whether using Date class in time tree
yscale	y scale
yscale_mapping	yscale mapping for category variable
ladderize	logical
right	logical
branch.length	variable for scaling branch, if 'none' draw cladogram
ndigits	number of digits to round numerical annotation variable
min_crossing	logical, rotate clades to minimize crossings
...	additional parameter

Value

tree

Author(s)

Klaus Schliep

See Also

evonet, ggtree

Examples

(enet <- ape::read.evonet(text='((a:2,(b:1)#H1:1):1,(#H1,c:1):2);'))
ggevonet(enet) + geom_tiplab()

KlausVigo/tanggle documentation built on April 16, 2022, 10:53 p.m.