tanggle-package: tanggle: Visualization of Phylogenetic Networks

In KlausVigo/tanggle: Visualization of Phylogenetic Networks

tanggle: Visualization of Phylogenetic Networks

Description

Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. 'ggtree' and using functions from 'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017] to allow the visualization of phylogenetic networks using the 'ggplot2' syntax. It offers an alternative to the plot functions already available in 'ape' Paradis and Schliep (2019) <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep (2011) <doi:10.1093/bioinformatics/btq706>.

Author(s)

Maintainer: Klaus Schliep [e-mail] (ORCID)

Authors:

• Marta Vidal-Garcia

• Claudia Solis-Lemus [e-mail] (ORCID)

• Leann Biancani

• Eren Ada

• L. Francisco Henao Diaz

Other contributors:

• Guangchuang Yu [contributor]

See Also

Useful links:

• https://klausvigo.github.io/tanggle

• https://github.com/KlausVigo/tanggle

• Report bugs at https://github.com/KlausVigo/tanggle/issues

KlausVigo/tanggle documentation built on April 16, 2022, 10:53 p.m.