Description Usage Arguments See Also
This function helps with the preparation of plotting data from continuous flow data files (i.e. the raw chromatogram data). Call either explicity and pass the result to iso_plot_continuous_flow_data
or let iso_plot_continuous_flow_data
take care of preparing the plotting data directly from the iso_files
. If a peak_table
is provided for peak annotation purposes, uses iso_combine_raw_data_with_peak_table
to combine the raw data from the iso_files with the provided peak data table.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | iso_prepare_continuous_flow_plot_data(
iso_files,
data = character(),
include_file_info = NULL,
time_interval = c(),
time_interval_units = "seconds",
filter = NULL,
normalize = FALSE,
zoom = NULL,
zoom_group = data,
peak_table = NULL,
file_id = default(file_id),
rt = default(rt),
rt_start = default(rt_start),
rt_end = default(rt_end),
rt_unit = NULL
)
|
iso_files |
collection of iso_file objects |
data |
which masses and ratios to plot (e.g. |
time_interval |
which time interval to plot |
time_interval_units |
which units the time interval is in, default is "seconds" |
filter |
any filter condition to apply to the data beyond the masses/ratio selection (param |
normalize |
whether to normalize the data (default is FALSE, i.e. no normalization). If TRUE, normalizes each trace across all files (i.e. normalized to the global max/min). This is particularly useful for overlay plotting different mass and/or ratio traces ( |
zoom |
if not set, automatically scales to the maximum range in the selected time_interval in each plotting panel. If set, scales by the indicated factor, i.e. values > 1 are zoom in, values < 1 are zoom out, baseline always remains the bottom anchor point. Note that zooming is always relative to the max in each zoom_group (by default |
peak_table |
a data frame that describes the peaks in this chromatogram. By default, the chromatographic data is prepared WITHOUT peaks information. Supply this parameter to add in the peaks data. Typically via |
file_id |
the column (or columns) that uniquely identifies individual analyses for proper matching of the raw chromatography data with the peak_table data. In most cases dealing with isoreader data, the default ( |
rt |
the column in the |
rt_start |
the column in the |
rt_end |
the column in the |
rt_unit |
which time unit the retention time columns ( |
Other plot functions:
iso_mark_calibration_range()
,
iso_mark_outliers()
,
iso_mark_value_range()
,
iso_mark_x_range()
,
iso_plot_continuous_flow_data()
,
iso_plot_data()
,
iso_plot_dual_inlet_data()
,
iso_plot_raw_data()
,
iso_plot_ref_peaks()
,
iso_plot_residuals()
,
iso_plot_scan_data()
,
iso_prepare_dual_inlet_plot_data()
,
iso_prepare_scan_plot_data()
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