Man pages for KrishnaswamyLab/phateR
PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding
| as.data.frame | Convert a PHATE object to a data.frame |
| as.matrix | Convert a PHATE object to a matrix |
| check_pyphate_version | Check that the current PHATE version in Python is up to date. |
| cluster_phate | KMeans on the PHATE potential Clustering on the PHATE... |
| ggplot | Convert a PHATE object to a data.frame for ggplot |
| install.phate | Install PHATE Python Package |
| library.size.normalize | Performs L1 normalization on input data such that the sum of... |
| phate | Run PHATE on an input data matrix |
| plot | Plot a PHATE object in base R |
| Print a PHATE object | |
| summary | Summarize a PHATE object |
| tree.data | Fake branching data for examples |
| tree.data.small | Fake branching data for running examples fast |
