plot: Plot a PHATE object in base R

In KrishnaswamyLab/phateR: PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding

Description

Plot a PHATE object in base R

Usage

## S3 method for class 'phate'
plot(x, ...)

Arguments

x	A fitted PHATE object
...	Arguments for plot()

Examples

if (reticulate::py_module_available("phate")) {

library(graphics)
# data(tree.data)
# We use a smaller tree to make examples run faster
data(tree.data.small)
phate.tree <- phate(tree.data.small$data)
plot(phate.tree, col=tree.data.small$branches)

}

KrishnaswamyLab/phateR documentation built on Feb. 15, 2021, 4:22 a.m.