pics.coloc.lite: pics.coloc.lite : Test for colocalization of two PICS sets

In Ksieber/piccolo: Estimate Colocalization Gentic Signals

Description

Same arguements as pics.coloc, return object is the only difference.

Usage

pics.coloc.lite(data1, data2, pics1 = "PICS_probability",
  pics2 = "PICS_probability", rsid1 = "Linked_SNP", rsid2 = "Linked_SNP",
  rounded = 6, priorc1 = 1e-04, priorc2 = 1e-04, priorc12 = 1e-05)

Arguments

data1	PICS sets, from pics.read or pics.download
data2	PICS sets, from pics.read or pics.download

Value

H3 & H4 posterior colocalization info. For concise dataframe returing *only* H3 & H4 posteriors use pics.coloc.lite()

H3 & H4

Examples

myColoc  <- pics.coloc(gwas.credSet, eQTL.credSet)

myColocs <- data %>% group_by() %>% do(pics.coloc.lite(.$gwas_pics %>% .[[1]], .$eqtl_pics %>% .[[1]]))

Ksieber/piccolo documentation built on Jan. 11, 2020, 11:39 a.m.