pics.download: pics.download : Query the PICs website and get a PICs...
In Ksieber/piccolo: Estimate Colocalization Gentic Signals
Description
Usage
Arguments
Value
Examples
Description
pics.download : Query the PICs website and get a PICs credible set for a SNP of interest
Usage
1
2
pics.download(rsid, pvalue, ancestry = "EUR", output = NA,
override = FALSE)
Arguments
rsid
valid rsID. e.g. rs6795744
pvalue
p-value for the rsid. Either scientific or -log10 base. e.g. "1E-20", "1e-20", or "20"
ancestry
= [EUR, ASN, AFR] Default = EUR
output
Specify path and name for the download to be saved to. Default = temporary file.
Value
PICs credible set
Examples
1
myCredSet <- pics.download(rsid="rs6795744", pvalue = "20")
Ksieber/piccolo documentation built on Jan. 11, 2020, 11:39 a.m.
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Description Usage Arguments Value Examples
Description
pics.download : Query the PICs website and get a PICs credible set for a SNP of interest
Usage
1 2 | pics.download(rsid, pvalue, ancestry = "EUR", output = NA,
override = FALSE)
|
Arguments
rsid |
valid rsID. e.g. rs6795744 |
pvalue |
p-value for the rsid. Either scientific or -log10 base. e.g. "1E-20", "1e-20", or "20" |
ancestry |
= [EUR, ASN, AFR] Default = EUR |
output |
Specify path and name for the download to be saved to. Default = temporary file. |
Value
PICs credible set
Examples
1 | myCredSet <- pics.download(rsid="rs6795744", pvalue = "20")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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