dbscan_SH: dbscan_SH
In Kyoko-wtnb/meRedith: MEREDITH (Multi-omic data integration approach)
Description
Usage
Arguments
Value
Description
DBSCAN with silhouette score optimization
Usage
1
2
Arguments
data
$Y of Rtsne output
showplot
Logical. TRUE to plot silhouette score and eps. Default is FALSE.
prop_outliers
A value between 0 to 1. The proportion of data points allowed to be unclustered. Default is 0.1.
eps_res
Integer. The resolution of simulation. Default is 500.
eps_range
NULL or vectore of two values. The space of search for eps parameter. If a vectore is given, simulation is performed between the given range. Otherwise, te serch space is defined based on input data size.
Value
A vector of cluster label. 0 is for outlyers.
Kyoko-wtnb/meRedith documentation built on May 8, 2019, 5:40 p.m.
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Description Usage Arguments Value
Description
DBSCAN with silhouette score optimization
Usage
1 2 |
Arguments
data |
$Y of Rtsne output |
showplot |
Logical. TRUE to plot silhouette score and eps. Default is FALSE. |
prop_outliers |
A value between 0 to 1. The proportion of data points allowed to be unclustered. Default is 0.1. |
eps_res |
Integer. The resolution of simulation. Default is 500. |
eps_range |
NULL or vectore of two values. The space of search for eps parameter. If a vectore is given, simulation is performed between the given range. Otherwise, te serch space is defined based on input data size. |
Value
A vector of cluster label. 0 is for outlyers.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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