Description Usage Arguments Value
MEREDITH combines a list of input data (data.frame or matrix) and perform tSNE
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data |
List of matrix or data frame. (Note that even when input is one matrix/dataframe, use list()) |
transfer |
Logical. TRUE if the input matrix/data frame have to be transfered. Default is FALSE. |
takepc |
Integer. The number of PC to keep. Default is 50. |
nTSNE |
Integer. The number of run for tSNE. Default is 100. |
dims, initial_dims, preplexity, theta, max_iter |
option of Rtsne (see ?Rtsne). |
Logical. |
The scale option for PCA (see ?prcomp). Default is FALSE |
explainedvar |
FALSE or a value. The percentage of explained variance to keep. Default is FALSE. If this argument is value between 0 and 100, takepc will be ignored. |
list of data same as the Rtsne output (see ?Rtsne for details)
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