README.md

In LBMC/wormRef: Nematode Reference Data For The RAPToR Package

wormRef

This repo is an R package with the nematode development references for age estimation using the RAPToR tool.

To install the package, run the following in your R console :

if (!requireNamespace("remotes", quietly = TRUE))
    install.packages("remotes")
remotes::install_github("LBMC/wormRef", build_vignettes = T)

Update info

v0.5

• Built a function factory to simplify ref. building code
• Added reference metadata to comply with RAPToR v1.2 update.
• Added time range/unit info in list_refs
• Added an aging reference (Cel_aging_1)

v0.4

• Added Meeuse et al. (2020) reference spanning L1 to adult development

v0.3

v0.3.1

• Fixed plot_refs not diplaying
• Removed doc typos

v0.3.0

• Updated reference parameters with RAPToR bug fix
• Changed all RPKM to TPM
• Updated the embryo reference with stricter quality filter on samples

v0.2

• Updated the internal structure to match the new RAPToR interface witth data-packages.
• Re-evaluated optimal interpolation of reference series using the new GEIM approach of RAPToR.

v0.1

• Created the data package.

LBMC/wormRef documentation built on April 6, 2023, 12:31 p.m.