Files in LCBC-UiO/ggsegExtra
Extra Utilities for the 'ggseg' and 'ggseg3d' Plotting Tools
.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/atlas-request.md
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/render-readme.yaml
.github/workflows/test-coverage.yaml
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/atlas-steps.R
R/colortable-funcs.R
R/coord-funcs.R
R/create-atlas.R
R/create-ggseg-atlas.R
R/create-ggseg3d-atlas.R
R/dpv-funcs.R
R/dpv2map.R
R/extra-atlases.R
R/fs-structs.R
R/fs-utils.R
R/mesh-funcs.R
R/obj-funcs.R
R/old/nifti2atlas.R
R/subject_2_ascii.R
R/surfsplit.R
R/sysdata.rda
R/utils.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
data-raw/old/get_surface.R
data-raw/old/old.zip
data-raw/old/palettes.R
data-raw/rh.aparc.DKTatlas.annot
data-raw/test_create_atlas.R
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/customatlas.html
docs/articles/customatlas3d.html
docs/articles/customatlas3d_files/header-attrs-2.1.3/header-attrs.js
docs/articles/customatlas_files/header-attrs-2.1.3/header-attrs.js
docs/articles/figures/vignette-yeo17-3d-plot.png
docs/articles/figures/vignette-yeo7-3d-plot.png
docs/articles/ggsegExtra.html
docs/articles/ggsegExtra_files/figure-html/ggseg-1.png
docs/articles/ggsegExtra_files/figure-html/ggseg-2.png
docs/articles/ggsegExtra_files/figure-html/ggseg-scale-1.png
docs/articles/ggsegExtra_files/figure-html/unnamed-chunk-4-1.png
docs/articles/ggsegExtra_files/header-attrs-2.1.3/header-attrs.js
docs/articles/ggsegrepo.html
docs/articles/ggsegrepo_files/header-attrs-2.1.3/header-attrs.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/annot2dpv.html
docs/reference/aparc_2_mesh.html
docs/reference/asc2ply.html
docs/reference/atlas_lab2ctab.html
docs/reference/atlas_vol2label.html
docs/reference/atlas_vol2surf.html
docs/reference/change_meshes.html
docs/reference/check_fs.html
docs/reference/ctab_line.html
docs/reference/curv2asc.html
docs/reference/curv2ply.html
docs/reference/curvnf2asc.html
docs/reference/fs_curvatures.html
docs/reference/fs_nofixcurv.html
docs/reference/fs_surfaces.html
docs/reference/get_ctab.html
docs/reference/get_mesh.html
docs/reference/getmode.html
docs/reference/ggseg_atlas_repos.html
docs/reference/index.html
docs/reference/install_ggseg_atlas.html
docs/reference/install_ggseg_atlas_all.html
docs/reference/is_ctab.html
docs/reference/is_facewise.html
docs/reference/isolate_region.html
docs/reference/lcbc_surf2surf.html
docs/reference/make_aparc_2_3datlas.html
docs/reference/make_aseg_2_3datlas.html
docs/reference/make_ggseg3d_2_ggseg.html
docs/reference/make_ggseg_repo.html
docs/reference/make_palette_ggseg.html
docs/reference/mri_pretess.html
docs/reference/mri_smooth.html
docs/reference/mri_tessellate.html
docs/reference/mri_vol2label.html
docs/reference/mri_vol2surf.html
docs/reference/mris_annot2label.html
docs/reference/mris_label2annot.html
docs/reference/prep_n_data.html
docs/reference/read_annotation.html
docs/reference/read_ctab.html
docs/reference/read_dpv.html
docs/reference/restruct_old_3datlas.html
docs/reference/smooth2srf.html
docs/reference/snapshot_brain.html
docs/reference/subject_2_ascii.html
docs/reference/surf2asc.html
docs/reference/surf2ply.html
docs/reference/surfsplit.html
docs/reference/write_ctab.html
docs/reference/write_dpv.html
docs/sitemap.xml
ggsegExtra.Rproj
inst/CITATION
inst/README_cit.bib
inst/WORDLIST
inst/ggsegExtra.svg
inst/logo.png
inst/m/dpx2map.m
inst/rstudio/templates/project/create-ggseg-atlas.dcf
inst/rstudio/templates/project/create-ggseg-atlas/DESCRIPTION
inst/rstudio/templates/project/create-ggseg-atlas/NAMESPACE
inst/rstudio/templates/project/create-ggseg-atlas/R/data.R
inst/rstudio/templates/project/create-ggseg-atlas/README.Rmd
inst/rstudio/templates/project/create-ggseg-atlas/data-raw/create-atlas.R
inst/rstudio/templates/project/create-ggseg-atlas/tests/testthat.R
inst/rstudio/templates/project/create-ggseg-atlas/tests/testthat/test-atlas.R
inst/rstudio/templates/project/ggseg-logo.png
inst/sticker.png
inst/surfaces/lh.LCBC
inst/surfaces/rh.LCBC
man-roxygen/annot_dir.R
man-roxygen/cleanup.R
man-roxygen/hemisphere.R
man-roxygen/ncores.R
man-roxygen/opts.R
man-roxygen/output_dir.R
man-roxygen/output_file.R
man-roxygen/smoothness.R
man-roxygen/steps.R
man-roxygen/subject.R
man-roxygen/subjects_dir.R
man-roxygen/tolerance.R
man-roxygen/verbose.R
man-roxygen/vertex_size_limits.R
man/aparc_2_mesh.Rd
man/atlas_lab2ctab.Rd
man/atlas_vol2label.Rd
man/atlas_vol2surf.Rd
man/change_meshes.Rd
man/check_fs.Rd
man/curv2ply.Rd
man/figures/logo.png
man/fs_curvatures.Rd
man/fs_nofixcurv.Rd
man/fs_surfaces.Rd
man/get_mesh.Rd
man/ggseg_atlas_repos.Rd
man/install_ggseg_atlas.Rd
man/install_ggseg_atlas_all.Rd
man/is_ctab.Rd
man/lcbc_surf2surf.Rd
man/make_aparc_2_3datlas.Rd
man/make_ggseg3d_2_ggseg.Rd
man/make_palette_ggseg.Rd
man/make_volumetric_2_3datlas.Rd
man/make_volumetric_ggseg.Rd
man/mri_annotation2label.Rd
man/mri_surf2surf_rereg.Rd
man/mri_vol2label.Rd
man/mris_ca_label.Rd
man/mris_label2annot.Rd
man/read_ctab.Rd
man/restruct_old_3datlas.Rd
man/smooth2srf.Rd
man/subject_2_ascii.Rd
man/surf2ply.Rd
man/surfsplit.Rd
man/write_ctab.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/spelling.R
tests/testthat.R
tests/testthat/helper.R
tests/testthat/test-extra-atlases.R
vignettes/.gitignore
vignettes/createaseg.Rmd
vignettes/createdkt.Rmd
vignettes/customatlas.Rmd
vignettes/customatlas3d.Rmd
vignettes/data-raw/lh.aparc.DKTatlas.annot
vignettes/data-raw/rh.aparc.DKTatlas.annot
vignettes/figures/aseg.png
vignettes/figures/aseg2_complete.png
vignettes/figures/aseg2_first.png
vignettes/figures/aseg2_nocol.png
vignettes/figures/aseg2_second.png
vignettes/figures/aseg_glass.png
vignettes/figures/aseg_raw.png
vignettes/figures/dkt.png
vignettes/figures/dkt3d.png
vignettes/figures/dkt_nocol.png
vignettes/figures/dkt_wrongcols.png
vignettes/figures/glasser-plot.png
vignettes/figures/jhu-plot.png
vignettes/figures/vignette-dkt-3d-plot.png
vignettes/figures/vignette-yeo17-3d-plot.png
vignettes/figures/vignette-yeo7-3d-plot.png
vignettes/ggsegExtra.Rmd
vignettes/ggsegrepo.Rmd
