In LCBC-UiO/ggsegExtra: Extra Utilities for the 'ggseg' and 'ggseg3d' Plotting Tools

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%",
  fig.width = 10, 
  fig.retina = 3
)

{REPO}

This package contains dataset for plotting the {GGSEG} atlas ggseg and ggseg3d.

Add reference here.

To learn how to use these atlases, please look at the documentation for ggseg and ggseg3d

Installation

We recommend installing the ggseg-atlases through the ggseg r-universe:

# Enable this universe
options(repos = c(
    ggseg = 'https://ggseg.r-universe.dev',
    CRAN = 'https://cloud.r-project.org'))

# Install some packages
install.packages('{REPO}')

You can install the released version of {REPO} from GitHub with:

# install.packages("remotes")
remotes::install_github("ggseg/{REPO}")

library(ggseg)
library(ggseg3d)
library({REPO})

plot({GGSEG}) +
  theme(legend.position = "bottom", 
        legend.text = element_text(size = 9)) +
  guides(fill = guide_legend(ncol = 6))

library(dplyr)
ggseg3d(atlas = {GGSEG}_3d) %>% 
  add_glassbrain() %>% 
  pan_camera("right lateral")

library(dplyr)
p <- ggseg3d(atlas = {GGSEG}_3d) %>%
  add_glassbrain(hemisphere = "left")%>%
  pan_camera("right lateral") %>%
  plotly::add_annotations( text="Screen capture",
                  legendtitle=TRUE, showarrow=FALSE,
                  font = list(color = "#000000b4",
                              family = 'sans serif',
                              size = 50))
plotly::orca(p, "man/figures/README-3d-plot.png")

knitr::include_graphics("man/figures/README-3d-plot.png")

Please note that the '{REPO}' project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

LCBC-UiO/ggsegExtra documentation built on May 9, 2022, 1:07 a.m.