get_normalizer: Generate the Normalizer Values for each Sample
In LCR-BCCRC/CHL26predictor: An R package for the CHL 26 Gene Predictor
Description
Usage
Arguments
Details
Value
Examples
Description
get_normalizer returns the normalizer values for each sample. The
normalizer value is based on the geometric mean of the housekeeper genes
ACTB, CLTC, and RPLP0.
Usage
1
get_normalizer(mat, genes.norm.factor = c("ACTB", "CLTC", "RPLP0"))
Arguments
mat
The expression matrix
genes.norm.factor
Character vector containing the housekeeper genes
to use to calculate the normalizer
Details
You can change the housekeeper genes by specifying the genes.norm.factor
parameter.
Value
A numeric vector with the samples as names and the normalizer
as values
Examples
1
normalizer <- get_normalizer(mat)
LCR-BCCRC/CHL26predictor documentation built on May 11, 2019, 4:15 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Examples
Description
get_normalizer returns the normalizer values for each sample. The
normalizer value is based on the geometric mean of the housekeeper genes
ACTB, CLTC, and RPLP0.
Usage
1 | get_normalizer(mat, genes.norm.factor = c("ACTB", "CLTC", "RPLP0"))
|
Arguments
mat |
The expression matrix |
genes.norm.factor |
Character vector containing the housekeeper genes to use to calculate the normalizer |
Details
You can change the housekeeper genes by specifying the genes.norm.factor parameter.
Value
A numeric vector with the samples as names and the normalizer as values
Examples
1 | normalizer <- get_normalizer(mat)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.