API for LTLA/TrajectoryUtils
Single-Cell Trajectory Analysis Utilities
| Global functions | |
|---|---|
| $,PseudotimeOrdering-method | Man page |
| $<-,PseudotimeOrdering-method | Man page |
| .choose_colnames | Source code |
| .create_cluster_mst | Source code |
| .create_mnn_distance_matrix | Source code |
| .dist_clusters_scaled | Source code |
| .enforce_endpoints | Source code |
| .estimate_edge_confidence | Source code |
| .rowstats | Source code |
| .rowstats_w | Source code |
| PseudotimeOrdering | Man page Source code |
| PseudotimeOrdering-class | Man page |
| averagePseudotime | Man page Source code |
| cellData | Man page Source code |
| cellData<- | Man page |
| cellData<-,PseudotimeOrdering-method | Man page |
| cellnames | Man page Source code |
| cellnames<- | Man page |
| cellnames<-,PseudotimeOrdering-method | Man page |
| createClusterMST | Man page |
| createClusterMST,ANY-method | Man page |
| createClusterMST,SingleCellExperiment-method | Man page |
| createClusterMST,SummarizedExperiment-method | Man page |
| defineMSTPaths | Man page Source code |
| guessMSTRoots | Man page Source code |
| ncells | Man page Source code |
| npaths | Man page Source code |
| pathData | Man page Source code |
| pathData<- | Man page |
| pathData<-,PseudotimeOrdering-method | Man page |
| pathStat | Man page Source code |
| pathStat<- | Man page |
| pathStat<-,PseudotimeOrdering-method | Man page |
| pathStatNames | Man page Source code |
| pathStatNames<- | Man page |
| pathStatNames<-,PseudotimeOrdering-method | Man page |
| pathStats | Man page Source code |
| pathStats<- | Man page |
| pathStats<-,PseudotimeOrdering-method | Man page |
| pathnames | Man page Source code |
| pathnames<- | Man page |
| pathnames<-,PseudotimeOrdering-method | Man page |
| rowmean | Man page Source code |
| rowmedian | Man page Source code |
| show,PseudotimeOrdering-method | Man page |
| splitByBranches | Man page Source code |
