Files in LTLA/beachmat
Compiling Bioconductor to Handle Each Matrix Type

.BBSoptions

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

R/AllGenerics.R R/RcppExports.R R/checkMemoryCache.R R/colBlockApply.R R/initializeCpp-methods.R R/realizeFileBackedMatrix.R R/setupDelayedMatrix.R R/setupUnknownMatrix.R R/toCsparse.R R/whichNonZero.R README.md

inst/CITATION

inst/NEWS.Rd

inst/easy_register.sh

inst/extensions/DESCRIPTION

inst/extensions/NAMESPACE

inst/extensions/R/beachmat.R inst/extensions/R/class.R

inst/extensions/src/aaron_matrix.h

inst/extensions/src/aaron_output.h

inst/extensions/src/character_access.cpp

inst/extensions/src/character_output.cpp

inst/extensions/src/exports.cpp

inst/extensions/src/exports.h

inst/extensions/src/integer_access.cpp

inst/extensions/src/integer_output.cpp

inst/extensions/tests/testthat.R inst/extensions/tests/testthat/setup-all.R inst/extensions/tests/testthat/test-character.R inst/extensions/tests/testthat/test-integer.R

inst/include/Rtatami.h

inst/include/beachmat/character_matrix.h

inst/include/beachmat/input/Csparse_reader.h

inst/include/beachmat/input/LIN_matrix.h

inst/include/beachmat/input/LIN_methods.h

inst/include/beachmat/input/delayed_reader.h

inst/include/beachmat/input/dense_reader.h

inst/include/beachmat/input/external_reader.h

inst/include/beachmat/input/simple_reader.h

inst/include/beachmat/input/unknown_reader.h

inst/include/beachmat/integer_matrix.h

inst/include/beachmat/logical_matrix.h

inst/include/beachmat/numeric_matrix.h

inst/include/beachmat/output/Csparse_writer.h

inst/include/beachmat/output/LIN_methods.h

inst/include/beachmat/output/LIN_output.h

inst/include/beachmat/output/external_writer.h

inst/include/beachmat/output/output_param.h

inst/include/beachmat/output/simple_writer.h

inst/include/beachmat/utils/const_column.h

inst/include/beachmat/utils/copyable_vector.h

inst/include/beachmat/utils/dim_checker.h

inst/include/beachmat/utils/dispatch.h

inst/include/beachmat/utils/external.h

inst/include/beachmat/utils/raw_structure.h

inst/include/beachmat/utils/utils.h

inst/include/beachmat3/Csparse_reader.h

inst/include/beachmat3/as_gCMatrix.h

inst/include/beachmat3/beachmat.h

inst/include/beachmat3/dim_checker.h

inst/include/beachmat3/lin_matrix.h

inst/include/beachmat3/ordinary_reader.h

inst/include/beachmat3/read_lin_block.h

inst/include/beachmat3/utils.h

inst/include/byteme/ChunkedBufferReader.hpp

inst/include/byteme/GzipFileReader.hpp

inst/include/byteme/GzipFileWriter.hpp

inst/include/byteme/IstreamReader.hpp

inst/include/byteme/OstreamWriter.hpp

inst/include/byteme/PerByte.hpp

inst/include/byteme/RawBufferReader.hpp

inst/include/byteme/RawBufferWriter.hpp

inst/include/byteme/RawFileReader.hpp

inst/include/byteme/RawFileWriter.hpp

inst/include/byteme/Reader.hpp

inst/include/byteme/SelfClosingFILE.hpp

inst/include/byteme/SelfClosingGzFile.hpp

inst/include/byteme/SomeBufferReader.hpp

inst/include/byteme/SomeFileReader.hpp

inst/include/byteme/Writer.hpp

inst/include/byteme/ZlibBufferReader.hpp

inst/include/byteme/ZlibBufferWriter.hpp

inst/include/byteme/byteme.hpp

inst/include/byteme/magic_numbers.hpp

inst/include/byteme/temp_file_path.hpp

inst/include/fetch.sh

inst/include/manticore/manticore.hpp

inst/include/tatami/base/Extractor.hpp

inst/include/tatami/base/Matrix.hpp

inst/include/tatami/base/Options.hpp

inst/include/tatami/base/SparseRange.hpp

inst/include/tatami/base/utils.hpp

inst/include/tatami/dense/DenseMatrix.hpp

inst/include/tatami/dense/VirtualDenseMatrix.hpp

inst/include/tatami/dense/convert_to_dense.hpp

inst/include/tatami/isometric/arith_utils.hpp

inst/include/tatami/isometric/binary/DelayedBinaryIsometricOp.hpp

inst/include/tatami/isometric/binary/arith_helpers.hpp

inst/include/tatami/isometric/binary/boolean_helpers.hpp

inst/include/tatami/isometric/binary/compare_helpers.hpp

inst/include/tatami/isometric/binary/utils.hpp

inst/include/tatami/isometric/boolean_utils.hpp

inst/include/tatami/isometric/compare_utils.hpp

inst/include/tatami/isometric/unary/DelayedUnaryIsometricOp.hpp

inst/include/tatami/isometric/unary/arith_helpers.hpp

inst/include/tatami/isometric/unary/boolean_helpers.hpp

inst/include/tatami/isometric/unary/compare_helpers.hpp

inst/include/tatami/isometric/unary/math_helpers.hpp

inst/include/tatami/other/DelayedBind.hpp

inst/include/tatami/other/DelayedCast.hpp

inst/include/tatami/other/DelayedTranspose.hpp

inst/include/tatami/sparse/CompressedSparseMatrix.hpp

inst/include/tatami/sparse/FragmentedSparseMatrix.hpp

inst/include/tatami/sparse/SemiCompressedSparseMatrix.hpp

inst/include/tatami/sparse/SparseSecondaryExtractorCore.hpp

inst/include/tatami/sparse/convert_to_compressed_sparse.hpp

inst/include/tatami/sparse/convert_to_fragmented_sparse.hpp

inst/include/tatami/sparse/primary_extraction.hpp

inst/include/tatami/sparse/utils.hpp

inst/include/tatami/stats/grouped_medians.hpp

inst/include/tatami/stats/grouped_sums.hpp

inst/include/tatami/stats/medians.hpp

inst/include/tatami/stats/ranges.hpp

inst/include/tatami/stats/sums.hpp

inst/include/tatami/stats/utils.hpp

inst/include/tatami/stats/variances.hpp

inst/include/tatami/subset/DelayedSubset.hpp

inst/include/tatami/subset/DelayedSubsetBlock.hpp

inst/include/tatami/subset/DelayedSubsetSorted.hpp

inst/include/tatami/subset/DelayedSubsetSortedUnique.hpp

inst/include/tatami/subset/DelayedSubsetUnique.hpp

inst/include/tatami/subset/make_DelayedSubset.hpp

inst/include/tatami/subset/utils.hpp

inst/include/tatami/tatami.hpp

inst/include/tatami/utils/ArrayView.hpp

inst/include/tatami/utils/ElementType.hpp

inst/include/tatami/utils/Oracles.hpp

inst/include/tatami/utils/SomeNumericArray.hpp

inst/include/tatami/utils/bind_intersection.hpp

inst/include/tatami/utils/compress_sparse_triplets.hpp

inst/include/tatami/utils/convert_to_dense.hpp

inst/include/tatami/utils/convert_to_sparse.hpp

inst/include/tatami/utils/process_consecutive_indices.hpp

inst/include/tatami/utils/wrap_shared_ptr.hpp

inst/include/tatami_chunked/CustomChunkedMatrix.hpp

inst/include/tatami_chunked/LruSlabCache.hpp

inst/include/tatami_chunked/OracleSlabCache.hpp

inst/include/tatami_chunked/SubsettedOracleSlabCache.hpp

inst/include/tatami_chunked/simple_chunk_wrappers.hpp

inst/include/tatami_chunked/tatami_chunked.hpp

inst/include/tatami_chunked/typical_slab_cache.hpp

inst/include/tatami_r/COO_SparseMatrix.hpp

inst/include/tatami_r/SVT_SparseMatrix.hpp

inst/include/tatami_r/SimpleMatrix.hpp

inst/include/tatami_r/UnknownMatrix.hpp

inst/include/tatami_r/parallelize.hpp

inst/include/tatami_r/tatami_r.hpp

inst/include/tatami_r/utils.hpp

inst/newtests/DESCRIPTION

inst/newtests/NAMESPACE

inst/newtests/R/RcppExports.R inst/newtests/R/namespace.R

inst/newtests/src/RcppExports.cpp

inst/newtests/src/test_clone.cpp

inst/newtests/src/test_errors.cpp

inst/newtests/src/test_get_column.cpp

inst/newtests/src/test_get_row.cpp

inst/newtests/src/test_get_sparse_column.cpp

inst/newtests/src/test_get_sparse_row.cpp

inst/newtests/src/test_promotion.cpp

inst/newtests/tests/testthat.R inst/newtests/tests/testthat/setup.R inst/newtests/tests/testthat/test-clone.R inst/newtests/tests/testthat/test-dense-column.R inst/newtests/tests/testthat/test-dense-row.R inst/newtests/tests/testthat/test-error.R inst/newtests/tests/testthat/test-promotion.R inst/newtests/tests/testthat/test-sparse-column.R inst/newtests/tests/testthat/test-sparse-row.R

inst/testpkg/DESCRIPTION

inst/testpkg/NAMESPACE

inst/testpkg/man/check_read.Rd

inst/testpkg/man/check_write.Rd

inst/testpkg/man/delayed_funs.Rd

inst/testpkg/src/beachtest.h

inst/testpkg/src/get_all.cpp

inst/testpkg/src/get_all.h

inst/testpkg/src/get_class.cpp

inst/testpkg/src/get_const.cpp

inst/testpkg/src/get_const.h

inst/testpkg/src/get_errors.cpp

inst/testpkg/src/get_errors.h

inst/testpkg/src/get_indexed.cpp

inst/testpkg/src/get_indexed.h

inst/testpkg/src/get_multi.cpp

inst/testpkg/src/get_multi.h

inst/testpkg/src/get_slice.cpp

inst/testpkg/src/get_slice.h

inst/testpkg/src/get_types.cpp

inst/testpkg/src/get_varslice.cpp

inst/testpkg/src/get_varslice.h

inst/testpkg/src/set_all.cpp

inst/testpkg/src/set_all.h

inst/testpkg/src/set_class.cpp

inst/testpkg/src/set_errors.cpp

inst/testpkg/src/set_errors.h

inst/testpkg/src/set_indexed.cpp

inst/testpkg/src/set_indexed.h

inst/testpkg/src/set_slice.cpp

inst/testpkg/src/set_slice.h

inst/testpkg/src/set_types.cpp

inst/testpkg/src/set_varslice.cpp

inst/testpkg/src/set_varslice.h

src/Makevars

src/RcppExports.cpp

src/delayed_isometric_binary.cpp

src/delayed_isometric_math.cpp

src/delayed_isometric_unary.cpp

src/delayed_other.cpp

src/dense_matrix.cpp

src/fragment_sparse_rows.cpp

src/sparse_matrix.cpp

src/tatami_utils.cpp

src/unknown_matrix.cpp

tests/testthat.R tests/testthat/setup.R tests/testthat/test-apply.R tests/testthat/test-check.R tests/testthat/test-checkMemoryCache.R tests/testthat/test-delayed.R tests/testthat/test-initializeCpp-isometric_binary.R tests/testthat/test-initializeCpp-isometric_unary.R tests/testthat/test-initializeCpp-other.R tests/testthat/test-realize.R tests/testthat/test-sparse.R tests/testthat/test-unknown.R tests/testthat/test-which-nonzero.R vignettes/linking.Rmd

LTLA/beachmat documentation built on April 1, 2024, 1:22 p.m.

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LTLA/beachmat
Compiling Bioconductor to Handle Each Matrix Type

Files in LTLA/beachmat
Compiling Bioconductor to Handle Each Matrix Type

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LTLA/beachmat Compiling Bioconductor to Handle Each Matrix Type

Files in LTLA/beachmat Compiling Bioconductor to Handle Each Matrix Type

R Package Documentation

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LTLA/beachmat
Compiling Bioconductor to Handle Each Matrix Type

Files in LTLA/beachmat
Compiling Bioconductor to Handle Each Matrix Type