API for LTLA/bluster
Clustering Algorithms for Bioconductor

Global functions
.DBSCAN	Source code
.check_nonna_slots	Source code
.check_positive_slots	Source code
.cluster_igraph	Source code
.compute_correspondence	Source code
.create_combination_names	Source code
.cut_hierarchical	Source code
.defaultScalarArguments	Man page
.defaultScalarArguments,AgnesParam-method	Man page
.defaultScalarArguments,BlusterParam-method	Man page
.defaultScalarArguments,ClaraParam-method	Man page
.defaultScalarArguments,DianaParam-method	Man page
.defaultScalarArguments,HclustParam-method	Man page
.defaultScalarArguments,HierarchicalParam-method	Man page
.defaultScalarArguments,PamParam-method	Man page
.expand_list	Source code
.extractScalarArguments	Man page Source code
.get_kmeans_defaults	Source code
.non_na_number	Source code
.non_na_scalar	Source code
.positive_number	Source code
.run_combination	Source code
.showScalarArguments	Man page Source code
.untable	Source code
AffinityParam	Man page Source code
AffinityParam-class	Man page
AgnesParam	Man page Source code
AgnesParam-class	Man page
BlusterParam-class	Man page
ClaraParam	Man page Source code
ClaraParam-class	Man page
DbscanParam	Man page Source code
DbscanParam-class	Man page
DianaParam	Man page Source code
DianaParam-class	Man page
DmmParam	Man page Source code
DmmParam-class	Man page
FixedNumberParam-class	Man page
HclustParam	Man page Source code
HclustParam-class	Man page
HierarchicalParam-class	Man page
KNNGraphParam	Man page Source code
KNNGraphParam-class	Man page
KmeansParam	Man page Source code
KmeansParam-class	Man page
MbkmeansParam	Man page Source code
MbkmeansParam-class	Man page
NNGraphParam	Man page Source code
NNGraphParam-class	Man page
PamParam	Man page Source code
PamParam-class	Man page
SNNGraphParam	Man page Source code
SNNGraphParam-class	Man page
SomParam	Man page Source code
SomParam-class	Man page
TwoStepParam	Man page Source code
TwoStepParam-class	Man page
[[,BlusterParam-method	Man page
[[,HclustParam-method	Man page
[[<-,BlusterParam-method	Man page
approxSilhouette	Man page Source code
bluster	Man page
bluster-package	Man page
bootstrapStability	Man page Source code
build_snn_number	Source code
build_snn_rank	Source code
centers	Man page
centers,FixedNumberParam-method	Man page
centers<-	Man page
centers<-,FixedNumberParam-method	Man page
clusterRMSD	Man page Source code
clusterRows	Man page
clusterRows,ANY,AffinityParam-method	Man page
clusterRows,ANY,AgnesParam-method	Man page
clusterRows,ANY,ClaraParam-method	Man page
clusterRows,ANY,DbscanParam-method	Man page
clusterRows,ANY,DianaParam-method	Man page
clusterRows,ANY,DmmParam-method	Man page
clusterRows,ANY,HclustParam-method	Man page
clusterRows,ANY,KNNGraphParam-method	Man page
clusterRows,ANY,KmeansParam-method	Man page
clusterRows,ANY,MbkmeansParam-method	Man page
clusterRows,ANY,PamParam-method	Man page
clusterRows,ANY,SNNGraphParam-method	Man page
clusterRows,ANY,SomParam-method	Man page
clusterRows,ANY,TwoStepParam-method	Man page
clusterSweep	Man page Source code
compareClusterings	Man page Source code
linkClusters	Man page Source code
linkClustersMatrix	Man page Source code
makeKNNGraph	Man page Source code
makeSNNGraph	Man page Source code
mergeCommunities	Man page Source code
neighborPurity	Man page Source code
neighborsToKNNGraph	Man page Source code
neighborsToSNNGraph	Man page Source code
nestedClusters	Man page Source code
pairwiseModularity	Man page Source code
pairwiseRand	Man page Source code
show,AffinityParam-method	Man page
show,AgnesParam-method	Man page
show,BlusterParam-method	Man page
show,ClaraParam-method	Man page
show,DbscanParam-method	Man page
show,DianaParam-method	Man page
show,DmmParam-method	Man page
show,FixedNumberParam-method	Man page
show,HclustParam-method	Man page
show,HierarchicalParam-method	Man page
show,KmeansParam-method	Man page
show,MbkmeansParam-method	Man page
show,NNGraphParam-method	Man page
show,PamParam-method	Man page
show,SomParam-method	Man page
show,TwoStepParam-method	Man page
sum_neighbor_weights	Source code
updateObject,HclustParam-method	Man page
updateObject,KmeansParam-method	Man page