CHANGELOG.md

In LUMC/DGE_analysis: dgeAnalysis

Changelog

version 1.5.2

• Bug fix: pvalue function overwritten

version 1.5.1

• Remove heatmap plot in enrichment
• Fix empty table not shown
• Update hover info
• Apply icon name change in updated package (fontawesome)
• Update markdowns to use non-interactive ggplot2 plots
• Reorder chunks in markdown
• Remove voom plot from raw data
• Rewrite plots to be based on ggplot2 -> ggplotly
• Change filtering for enrichment
• Bug fix for tSNE: Missing break in loop

version 1.4.4

• Add file names and md5 to markdown
• Add new CPM filter for number of samples (percentage)
• Add dendrogram to dimension reduction
• Change export file name and remove quotes from exported dataframe
• Small infobox update
• Add tSNE plot to dimension reduction
• Move normalized MDS to Dimension reduction
• Change PCA tab to dimension reduction
• Remove MDS 3D and PCA 3D
• Fix false warning: Contrast are the same error

version 1.4.3

• Add prior count to CPM calculation
• Add FDR sort again to markdown files
• Fix filenames when downloading
• Add check reload to barcodeplot to update add genes list
• Change gProfiler correction to gSCS

version 1.4.2

• Remove ordering based on FDR in deTab
• Add Changelog file

LUMC/DGE_analysis documentation built on Aug. 12, 2022, 11:04 p.m.