lemma.outdir: Directory for lemma output.
In LXQin/EquiNorm: Normalize expression data using equivalently expressed genes
Description
(Optional) The function equi.gene.norm() implements an EM algorithm to estimate array effects and classify genes as non-differentially expressed, under-expressed, or over-expressed. The M-step of this EM algorithm calls the lemma() function in the lemma library to estimate an auxiliary EM algorithm, which actually does the gene classification. The following parameters are passed to lemma(). For further information see the documentation for the lemma package. lemma.outdir specifies the output directory in which results from lemma() estimation are stored. The default value is tempdir(). This will place intermdiate files in the R temporary folder.
LXQin/EquiNorm documentation built on May 7, 2019, 7:59 a.m.
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Description
(Optional) The function equi.gene.norm() implements an EM algorithm to estimate array effects and classify genes as non-differentially expressed, under-expressed, or over-expressed. The M-step of this EM algorithm calls the lemma() function in the lemma library to estimate an auxiliary EM algorithm, which actually does the gene classification. The following parameters are passed to lemma(). For further information see the documentation for the lemma package. lemma.outdir specifies the output directory in which results from lemma() estimation are stored. The default value is tempdir(). This will place intermdiate files in the R temporary folder.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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