howManyCells: Count the number of cells respecting the conditions

In LabexCortexBioinformatics/LxCxUtils: Utils Function for Labex Cortex Bioinformatics Platform

Count the number of cells respecting the conditions

Description

Apply WhichCells2 and return the length.

Usage

howManyCells(
  seur,
  features,
  assay = "RNA",
  slot = "data",
  value_to_compare = 0,
  comparison_type = "superior",
  verbose = TRUE
)

Arguments

seur	Seurat object to use.
features	Features to use.
assay	Assay to use if features are genes. Default to "RNA".
slot	Slot to use if features are genes. Default to "data".
value_to_compare	Which value (or values) to compare the features to. Must be either a single element or a list of the same length as features. Default to 0.
comparison_type	one of "inferior" or 1, "inferior or equal" or 2, "equal" or 3, "superior or equal" or 4, "superior" or 5. Can be a list of them, the same length as features. Default to "superior".
verbose	Whether or not to print the summary dataframe. Default to TRUE.

Value

The number of cells respecting all the conditions.

LabexCortexBioinformatics/LxCxUtils documentation built on Aug. 2, 2022, 6:23 a.m.