plotCumulativeVarExplained: Plot the cumulative variance explained
In LabexCortexBioinformatics/LxCxUtils: Utils Function for Labex Cortex Bioinformatics Platform
plotCumulativeVarExplained R Documentation
Plot the cumulative variance explained
Description
This function first verify that the variance explained has been computed,
and if not computes it. It then computes the cumulative sum of the variances,
and then creates a plot of the cumulative variance explained for each PC.
Usage
plotCumulativeVarExplained(seur, npcs = 50)
Arguments
seur
The Seurat object from which the PCA data will be taken
npcs
The number of PCs to plot
Value
A ggplot object
LabexCortexBioinformatics/LxCxUtils documentation built on Aug. 2, 2022, 6:23 a.m.
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| plotCumulativeVarExplained | R Documentation |
Plot the cumulative variance explained
Description
This function first verify that the variance explained has been computed, and if not computes it. It then computes the cumulative sum of the variances, and then creates a plot of the cumulative variance explained for each PC.
Usage
plotCumulativeVarExplained(seur, npcs = 50)
Arguments
seur |
The Seurat object from which the PCA data will be taken |
npcs |
The number of PCs to plot |
Value
A ggplot object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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