plot.juxtapose: Plot MCMC Juxtaposition

In LaplacesDemonR/LaplacesDemon: Complete Environment for Bayesian Inference

Plot MCMC Juxtaposition

Description

This may be used to plot a juxtaposition of MCMC algorithms according either to IAT or ISM (Independent Samples per Minute).

Usage

## S3 method for class 'juxtapose'
plot(x, Style="ISM", ...)

Arguments

x	This required argument is an object of class juxtapose.
Style	This argument accepts either IAT or ISM, and defaults to ISM.
...	Additional arguments are unused.

Details

When Style="IAT", the medians and 95% probability intervals of the integrated autocorrelation times (IATs) of MCMC algorithms are displayed in a caterpillar plot. The best, or least inefficient, MCMC algorithm is the algorithm with the lowest IAT.

When Style="ISM", the medians and 95% probability intervals of the numbers of independent samples per minute (ISM) of MCMC algorithms are displayed in a caterpillar plot. The best, or least inefficient, MCMC algorithm is the algorithm with the highest ISM.

For more information, see the Juxtapose function.

Author(s)

Statisticat, LLC. [e-mail]

See Also

Juxtapose

LaplacesDemonR/LaplacesDemon documentation built on April 1, 2024, 7:22 a.m.