In LarsenLab/immuntools: Larsen lab data analysis toolbox

library(DiagrammeR)

knitr::opts_chunk$set(
  echo = FALSE
)

Overview

Project Aims

Project Files

Rmd files

01_overview.Rmd
02_prep.Rmd
03_explore.Rmd
04_analysis.Rmd
05_report.Rmd

R files

Work Flow

grViz("digraph flowchart {
      graph [overlap = true, fontsize = 8]
      node [fontname = Courier, shape = box, color = grey, fillcolor = whitesmoke, style = filled] 
      edge [dir = both,arrowsize = 0.4, color = grey]
      tab1 [label = '@@1']
      tab2 [label = '@@2']
      tab3 [label = '@@3']
      tab4 [label = '@@4']
      tab5 [label = '@@5']

      tab1 -> tab2 -> tab3 -> tab4 -> tab5;
      }

      [1]: 'study overview'
      [2]: 'data clean/preprocessing'
      [3]: 'data explore'
      [4]: 'data analysis'
      [5]: 'report'
      ")

```{bash dir structure}

please install Homebrew ( https://brew.sh ) and the tree command line tool ( ~/$ brew install tree) before running code below

html files are excluded from the tree

tree -I '.html|.css' -H '' --nolinks -o fd_str_tree.html

```r
htmltools::includeHTML("fd_str_tree.html")
if (file.exists("fd_str_tree.html")) 
    unlink("fd_str_tree.html")

LarsenLab/immuntools documentation built on July 19, 2023, 9:43 a.m.