PlotHTO: PlotHTO

In LeiLi-Uchicago/HTOreader: An R package for cell hashing demultiplexing

PlotHTO

Description

function to plot histgram of each HTO signal (and their cutoff)

Usage

PlotHTO(
  object = NULL,
  assay = "HTO",
  method = "log",
  cutoff = NULL,
  xlim = NULL,
  plot_existing_cutoff = TRUE
)

Arguments

object	Seurat object
assay	the assay name of Hashtag signals, Default is "HTO"
method	normalize method, could be "CLR" or 'log'. Default is "log"
cutoff	users can choose to display cutoff for each HTO signal by giving a data array
xlim	max limit of x axis. Default is "NULL". Can be used to trim the density plot for better visualization of positive peaks and negative peaks
plot_existing_cutoff	plot existing cutoff if the method fits

LeiLi-Uchicago/HTOreader documentation built on Aug. 14, 2024, 8:38 p.m.