athNet: Example network data set for CoReg

In LiLabAtVT/CoReg: Identification of co-regulators

Example network data set for CoReg

Description

This is the example network data set for CoReg package. This network is a merged network generated by two publications for Arabidopsis. (See references)

Usage

data(athNet)

Format

An igraph object containing 412 nodes and 1490 edges.

References

M. Taylor-Teeples et al. (2015) An Arabidopsis gene regulatory network for secondary cell wall synthesis. Nature 2015 517:571-575.

Erin E. Sparks et al. (2016) Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Developmental Cell 2016 39:585-596.

Examples

data(athNet)

# Display summary information for the loaded Aradbiopsis network
summary(athNet)

LiLabAtVT/CoReg documentation built on May 8, 2022, 10:17 a.m.