generateSimNet | R Documentation |
This function generates simulated network with pre-specified modular structure
generateSimNet(mSize,mNum,targetNum,auxNum,prob)
mSize |
Size of module in simulated network(s) |
mNum |
Number of regulator gene in each module |
targetNum |
Number of target genes for each regualtor in the module |
auxNum |
Number of auxiliary genes in simulated network(s) |
prob |
Co-regulation probability. A numeric value between 0 and 1. Larger value generates network with stronger co-regulation pattern |
This function first calls generates simulated network with pre-specified modular structure. The properties of network are specified by the arguments. The approach of generating simulated netwoks is a modified version of a previous publication. Modification is made to generate co-regulatory modules in directed network
A list including following elements:
el |
Edge list of the simulated network |
modulePartition |
The pre-specified module labels for regulator genes. They are considered as "ground truth" of co-regulatory mdoules |
Qi Song
netSimAndEval
re<-generateSimNet(10,5,20,100,0.5) # View the edge list of simulated network re$el
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